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US20240398811, Example 114

E3L035076
Internal ID: BDB035076
Activity data available Local docking-ready structure
Dock with O75530 Dock with Q09028
Structure
/e3_file/ligand_db/generated/BDB035076/BDB035076.sdf
Basic Properties
Compound ID
E3L035076
Internal ID
BDB035076
Molecular formula
C21H16FN7O3
Molecular weight
433.403000
Exact mass
433.129866
XLogP
2.3858
TPSA
130.3600
HBA / HBD
7 / 2
Rotatable bonds
5
Heavy atoms / rings
32 / 5
Activity summary
IC50 < 100.00000000 nM
2 activity record(s) imported
InChIKey
AFEKNNXNWROLRP-UHFFFAOYSA-N
SMILES
Cn1nc(C(=O)O)cc1-c1cnc(NCc2c(F)ccc3c2CCO3)n2cc(C#N)nc12
Aliases
BDBM707091 (preferred) US20240398811, Example 114 (source_name) BDBM707091 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED
reported_binder bindingdb_reported Yes No low BindingDB:BDBM707091 medium
; target=Histone-lysine N-methyltransferase EZH2
Q09028 RBBP4;RBAP48
Histone-binding protein RBBP4
reported_binder bindingdb_reported Yes No low BindingDB:BDBM707091 medium
; target=Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM707091 Open - 10.7270/Q2XK8M3P
PubChem CID155676964 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1nc(C(=O)O)cc1-c1cnc(NCc2c(F)ccc3c2CCO3)n2cc(C#N)nc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035076/BDB035076.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035076/BDB035076.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035076/BDB035076.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035076/BDB035076.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035076/BDB035076.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component
BindingDB:BDBM707091 IC50 <100 nM High DOI: 10.7270/Q2XK8M3P 1
Histone-lysine N-methyltransferase EZH2
Q09028
E3 ligase component
BindingDB:BDBM707091 IC50 <100 nM High DOI: 10.7270/Q2XK8M3P 1