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US12172992, Example 4

E3L035193
Internal ID: BDB035193
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB035193/BDB035193.sdf
Basic Properties
Compound ID
E3L035193
Internal ID
BDB035193
Molecular formula
C42H48FN11O4
Molecular weight
789.917000
Exact mass
789.387477
XLogP
6.1007
TPSA
174.6100
HBA / HBD
12 / 3
Rotatable bonds
11
Heavy atoms / rings
58 / 7
Activity summary
IC50 > 10000.00000000 nM
1 activity record(s) imported
InChIKey
XZWLTIJDAOOAOZ-RRPNLBNLSA-N
SMILES
Cc1cc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)c(F)c5)C[C@@H]4C)cn3)ncn2)ccc1[C@@H](C)NC(=O)c1nc(C(C)(C)C)no1
Aliases
BDBM708088 (preferred) US12172992, Example 4 (source_name) BDBM708088 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM708088 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM708088 Open - 10.7270/Q2CJ8K12
PubChem CID169081285 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(-c2cc(Nc3ccc(N4CCN(CCc5ccc(N6CCC(=O)NC6=O)c(F)c5)C[C@@H]4C)cn3)ncn2)ccc1[C@@H](C)NC(=O)c1nc(C(C)(C)C)no1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035193/BDB035193.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035193/BDB035193.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035193/BDB035193.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035193/BDB035193.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035193/BDB035193.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM708088 IC50 >10000 nM Low DOI: 10.7270/Q2CJ8K12 1