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BDBM708512

E3L035230
Internal ID: BDB035230
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB035230/BDB035230.sdf
Basic Properties
Compound ID
E3L035230
Internal ID
BDB035230
Molecular formula
C33H47N5O3
Molecular weight
561.771000
Exact mass
561.367890
XLogP
5.3836
TPSA
105.1200
HBA / HBD
6 / 3
Rotatable bonds
11
Heavy atoms / rings
41 / 7
Activity summary
IC50 unknown 1050.00000000 nM
1 activity record(s) imported
InChIKey
GUVOZZRPLCFGGY-PCOLPEOWSA-N
SMILES
Cc1nc2cccc(NCCCCCCCN[C@@]34CC5CC(C)(C[C@@](C)(C5)C3)C4)c2c(=O)n1C1CCC(=O)NC1=O
Aliases
BDBM708512 (preferred) BDBM708512 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM708512 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM708512 Open - 10.7270/Q23201CK
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1nc2cccc(NCCCCCCCN[C@@]34CC5CC(C)(C[C@@](C)(C5)C3)C4)c2c(=O)n1C1CCC(=O)NC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035230/BDB035230.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035230/BDB035230.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035230/BDB035230.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035230/BDB035230.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035230/BDB035230.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM708512 IC50 1050 nM Low DOI: 10.7270/Q23201CK 1