< Back to small molecule database

BDBM708514

E3L035232
Internal ID: BDB035232
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB035232/BDB035232.sdf
Basic Properties
Compound ID
E3L035232
Internal ID
BDB035232
Molecular formula
C33H47N5O3
Molecular weight
561.771000
Exact mass
561.367890
XLogP
5.2395
TPSA
105.1200
HBA / HBD
6 / 3
Rotatable bonds
12
Heavy atoms / rings
41 / 7
Activity summary
IC50 unknown 680.00000000 nM
1 activity record(s) imported
InChIKey
RLHQMJYAEWWYJG-UHFFFAOYSA-N
SMILES
Cc1nc2cccc(NCCCCCCCNC(C)C34CC5CC(CC(C5)C3)C4)c2c(=O)n1C1CCC(=O)NC1=O
Aliases
BDBM708514 (preferred) 3-(5-((7-((1-((3r,5r,7r)-adamantan-1-yl)ethyl)amino)heptyl) amino)-2-methyl-4-oxoquinazolin-3(4H)-yl)piperidine-2,6-dione (source_name) BDBM708514 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM708514 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM708514 Open - 10.7270/Q23201CK
PubChem CID169093843 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1nc2cccc(NCCCCCCCNC(C)C34CC5CC(CC(C5)C3)C4)c2c(=O)n1C1CCC(=O)NC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035232/BDB035232.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035232/BDB035232.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035232/BDB035232.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035232/BDB035232.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035232/BDB035232.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM708514 IC50 680 nM Moderate DOI: 10.7270/Q23201CK 1