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US20240425497, Example 54

E3L035328
Internal ID: BDB035328
Activity data available Local docking-ready structure
Dock with Q13191
Structure
/e3_file/ligand_db/generated/BDB035328/BDB035328.sdf
Basic Properties
Compound ID
E3L035328
Internal ID
BDB035328
Molecular formula
C27H21F2N5O3
Molecular weight
501.493000
Exact mass
501.161246
XLogP
3.5552
TPSA
115.0100
HBA / HBD
5 / 2
Rotatable bonds
5
Heavy atoms / rings
37 / 6
Activity summary
IC50 < 100.00000000 nM
1 activity record(s) imported
InChIKey
XJBNSKOQXZGWDY-UHFFFAOYSA-N
SMILES
N#Cc1cn(-c2cc(-c3ccc(F)cc3C(=O)N3CC(F)C3)cc(C3CC3)n2)c(=O)c2[nH]c(CO)cc12
Aliases
BDBM708726 (preferred) US20240425497, Example 54 (source_name) BDBM708726 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q13191 CBLB;RNF56;Nbla00127
E3 ubiquitin-protein ligase CBL-B
reported_binder bindingdb_reported Yes No low BindingDB:BDBM708726 medium
; target=E3 ubiquitin-protein ligase CBL-B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM708726 Open - 10.7270/Q2FB57G5
PubChem CID172580977 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready N#Cc1cn(-c2cc(-c3ccc(F)cc3C(=O)N3CC(F)C3)cc(C3CC3)n2)c(=O)c2[nH]c(CO)cc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035328/BDB035328.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035328/BDB035328.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035328/BDB035328.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035328/BDB035328.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035328/BDB035328.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase CBL-B
Q13191
E3 ligase component
BindingDB:BDBM708726 IC50 <100 nM High DOI: 10.7270/Q2FB57G5 1