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US20250051324, Example 5

E3L035915
Internal ID: BDB035915
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB035915/BDB035915.sdf
Basic Properties
Compound ID
E3L035915
Internal ID
BDB035915
Molecular formula
C25H28F3N5O3
Molecular weight
503.525000
Exact mass
503.214424
XLogP
2.3704
TPSA
98.6600
HBA / HBD
7 / 2
Rotatable bonds
6
Heavy atoms / rings
36 / 4
Activity summary
IC50 unknown 34.00000000 nM
1 activity record(s) imported
InChIKey
HRQIWCFSPDTCRM-UHFFFAOYSA-N
SMILES
CNC(=O)c1ccc(N2CCN(Cc3cnc4c(c3)CC(=O)C(C(F)(F)F)=C4C)C(CCO)C2)cn1
Aliases
BDBM720210 (preferred) US20250051324, Example 5 (source_name) BDBM720210 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM720210 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM720210 Open - 10.7270/Q2Q244S9
PubChem CID175681733 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNC(=O)c1ccc(N2CCN(Cc3cnc4c(c3)CC(=O)C(C(F)(F)F)=C4C)C(CCO)C2)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035915/BDB035915.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035915/BDB035915.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035915/BDB035915.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035915/BDB035915.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035915/BDB035915.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM720210 IC50 34 nM High DOI: 10.7270/Q2Q244S9 1