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US20250051324, Example 13

E3L035920
Internal ID: BDB035920
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB035920/BDB035920.sdf
Basic Properties
Compound ID
E3L035920
Internal ID
BDB035920
Molecular formula
C23H25F3N4O3S
Molecular weight
494.539000
Exact mass
494.159946
XLogP
2.7729
TPSA
82.6100
HBA / HBD
6 / 1
Rotatable bonds
5
Heavy atoms / rings
34 / 4
Activity summary
IC50 unknown 7.37000000 nM
1 activity record(s) imported
InChIKey
OSPFJATYTOFODI-UHFFFAOYSA-N
SMILES
CNS(=O)(=O)c1ccc(N2CCN(Cc3cnc4c(c3)CC(=O)C(C(F)(F)F)=C4C)CC2)cc1
Aliases
BDBM720215 (preferred) US20250051324, Example 13 (source_name) BDBM720215 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM720215 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM720215 Open - 10.7270/Q2Q244S9
PubChem CID175681738 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNS(=O)(=O)c1ccc(N2CCN(Cc3cnc4c(c3)CC(=O)C(C(F)(F)F)=C4C)CC2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035920/BDB035920.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035920/BDB035920.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035920/BDB035920.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035920/BDB035920.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035920/BDB035920.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM720215 IC50 7.37 nM Very high DOI: 10.7270/Q2Q244S9 1