< Back to small molecule database

US20250051324, Example 14

E3L035921
Internal ID: BDB035921
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB035921/BDB035921.sdf
Basic Properties
Compound ID
E3L035921
Internal ID
BDB035921
Molecular formula
C24H23F3N4O2
Molecular weight
456.468000
Exact mass
456.177311
XLogP
3.5865
TPSA
75.1900
HBA / HBD
5 / 1
Rotatable bonds
4
Heavy atoms / rings
33 / 4
Activity summary
IC50 unknown 0.83000000 nM
2 activity record(s) imported
InChIKey
GBLMKEGSKITKAH-UHFFFAOYSA-N
SMILES
CNC(=O)c1ccc(C2=CCN(Cc3cnc4c(c3)CC(=O)C(C(F)(F)F)=C4C)CC2)cn1
Aliases
BDBM720216 (preferred) US20250051324, Example 14 (source_name) BDBM720216 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM720216 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM720216 Open - 10.7270/Q2Q244S9
PubChem CID175681739 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNC(=O)c1ccc(C2=CCN(Cc3cnc4c(c3)CC(=O)C(C(F)(F)F)=C4C)CC2)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035921/BDB035921.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035921/BDB035921.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035921/BDB035921.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035921/BDB035921.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035921/BDB035921.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM720216 IC50 0.83 nM Very high DOI: 10.7270/Q2Q244S9 1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM720216 IC50 1.38 nM Very high DOI: 10.7270/Q2Q244S9 1