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US20250051324, Example 99

E3L035934
Internal ID: BDB035934
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB035934/BDB035934.sdf
Basic Properties
Compound ID
E3L035934
Internal ID
BDB035934
Molecular formula
C24H25F3N6O2
Molecular weight
486.498000
Exact mass
486.199109
XLogP
2.8597
TPSA
94.2200
HBA / HBD
6 / 2
Rotatable bonds
5
Heavy atoms / rings
35 / 5
Activity summary
IC50 unknown 1.53000000 nM
1 activity record(s) imported
InChIKey
BDNQEZXCWBOODK-UHFFFAOYSA-N
SMILES
Cc1c(C(F)(F)F)c(=O)[nH]c2cc(CN3CCN(c4ccc(C(=O)NC5CC5)nc4)CC3)cnc12
Aliases
BDBM720229 (preferred) US20250051324, Example 99 (source_name) BDBM720229 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM720229 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM720229 Open - 10.7270/Q2Q244S9
PubChem CID168931566 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1c(C(F)(F)F)c(=O)[nH]c2cc(CN3CCN(c4ccc(C(=O)NC5CC5)nc4)CC3)cnc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB035934/BDB035934.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB035934/BDB035934.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB035934/BDB035934.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB035934/BDB035934.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB035934/BDB035934.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM720229 IC50 1.53 nM Very high DOI: 10.7270/Q2Q244S9 1