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US20250073340, Example 20

E3L036056
Internal ID: BDB036056
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB036056/BDB036056.sdf
Basic Properties
Compound ID
E3L036056
Internal ID
BDB036056
Molecular formula
C51H51Cl2FN6O6
Molecular weight
933.909000
Exact mass
932.323117
XLogP
7.6684
TPSA
149.1800
HBA / HBD
8 / 4
Rotatable bonds
7
Heavy atoms / rings
66 / 9
Activity summary
IC50 unknown 3.67000000 nM
1 activity record(s) imported
InChIKey
ZOOZRFOSYFZGBP-JRDHYNAESA-N
SMILES
COc1cc(C(=O)N2CCC(C#Cc3cccc4c3CN(C3CCC(=O)NC3=O)C4=O)CC2)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F
Aliases
BDBM725173 (preferred) US20250073340, Example 20 (source_name) BDBM725173 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM725173 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM725173 Open - 10.7270/Q2223093
PubChem CID164592071 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(C(=O)N2CCC(C#Cc3cccc4c3CN(C3CCC(=O)NC3=O)C4=O)CC2)ccc1NC(=O)[C@@H]1N[C@@H](CC(C)(C)C)[C@@]2(CNc3cc(Cl)ccc32)[C@H]1c1cccc(Cl)c1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036056/BDB036056.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036056/BDB036056.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036056/BDB036056.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036056/BDB036056.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036056/BDB036056.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM725173 IC50 3.67 nM Very high DOI: 10.7270/Q2223093 1