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US20250074910, Example 16-2

E3L036109
Internal ID: BDB036109
Activity data available Local docking-ready structure
Dock with Q03164
Structure
/e3_file/ligand_db/generated/BDB036109/BDB036109.sdf
Basic Properties
Compound ID
E3L036109
Internal ID
BDB036109
Molecular formula
C36H47FN6O3
Molecular weight
630.809000
Exact mass
630.369368
XLogP
5.8938
TPSA
91.7600
HBA / HBD
8 / 0
Rotatable bonds
8
Heavy atoms / rings
46 / 9
Activity summary
IC50 unknown 163.00000000 nM
1 activity record(s) imported
InChIKey
PYYZJMLZLOBWLV-WGQYCQMISA-N
SMILES
CC(C)N(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C1CC1
Aliases
BDBM725715 (preferred) US20250074910, Example 16-2 (source_name) BDBM725715 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q03164 KMT2A;ALL1;CXXC7;HRX;HTRX;MLL;MLL1;TRX1
Histone-lysine N-methyltransferase 2A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM725715 medium
; target=Histone-lysine N-methyltransferase 2A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM725715 Open - 10.7270/Q2D79GZH
PubChem CID176456284 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)N(C(=O)c1cc(F)ccc1Oc1nncnc1N1CC2(CCN(C[C@H]3CC4CCC3CC43CCC(=O)C3)CC2)C1)C1CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036109/BDB036109.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036109/BDB036109.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036109/BDB036109.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036109/BDB036109.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036109/BDB036109.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase 2A
Q03164
E3 ligase component 		BindingDB:BDBM725715 IC50 163 nM Moderate DOI: 10.7270/Q2D79GZH 1