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US20250082630, Example 5

E3L036176
Internal ID: BDB036176
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB036176/BDB036176.sdf
Basic Properties
Compound ID
E3L036176
Internal ID
BDB036176
Molecular formula
C22H24FN5O2
Molecular weight
409.465000
Exact mass
409.191403
XLogP
2.1678
TPSA
91.8900
HBA / HBD
6 / 1
Rotatable bonds
4
Heavy atoms / rings
30 / 4
Activity summary
IC50 unknown 5.00000000 nM
1 activity record(s) imported
InChIKey
DBZRWJGTVUHJEW-UHFFFAOYSA-N
SMILES
CC1=Nc2ccc(CN3CCN(c4ccc(C(N)=O)nc4F)CC3)c(C)c2CC1=O
Aliases
BDBM726500 (preferred) US20250082630, Example 5 (source_name) BDBM726500 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM726500 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM726500 Open - 10.7270/Q27M0DG7
PubChem CID164040262 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC1=Nc2ccc(CN3CCN(c4ccc(C(N)=O)nc4F)CC3)c(C)c2CC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036176/BDB036176.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036176/BDB036176.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036176/BDB036176.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036176/BDB036176.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036176/BDB036176.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM726500 IC50 5 nM Very high DOI: 10.7270/Q27M0DG7 1