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US20250082630, Example 8

E3L036179
Internal ID: BDB036179
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB036179/BDB036179.sdf
Basic Properties
Compound ID
E3L036179
Internal ID
BDB036179
Molecular formula
C23H25Cl2N5O2
Molecular weight
474.392000
Exact mass
473.138530
XLogP
3.6779
TPSA
77.9000
HBA / HBD
6 / 1
Rotatable bonds
5
Heavy atoms / rings
32 / 4
Activity summary
IC50 unknown 4.00000000 nM
1 activity record(s) imported
InChIKey
BBZFZQCABMRZBW-UHFFFAOYSA-N
SMILES
CCC1=Nc2ccc(CN3CCN(c4ccc(C(=O)NC)nc4Cl)CC3)c(Cl)c2CC1=O
Aliases
BDBM726503 (preferred) US20250082630, Example 8 (source_name) BDBM726503 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM726503 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM726503 Open - 10.7270/Q27M0DG7
PubChem CID164089428 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCC1=Nc2ccc(CN3CCN(c4ccc(C(=O)NC)nc4Cl)CC3)c(Cl)c2CC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036179/BDB036179.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036179/BDB036179.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036179/BDB036179.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036179/BDB036179.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036179/BDB036179.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM726503 IC50 4 nM Very high DOI: 10.7270/Q27M0DG7 1