< Back to small molecule database

US20250082630, Example 22

E3L036193
Internal ID: BDB036193
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB036193/BDB036193.sdf
Basic Properties
Compound ID
E3L036193
Internal ID
BDB036193
Molecular formula
C20H20F2N6O2
Molecular weight
414.416000
Exact mass
414.161580
XLogP
1.3258
TPSA
108.2100
HBA / HBD
6 / 2
Rotatable bonds
4
Heavy atoms / rings
30 / 4
Activity summary
IC50 unknown 6.00000000 nM
1 activity record(s) imported
InChIKey
GMJIXZWNFGXODH-UHFFFAOYSA-N
SMILES
Cc1nc2ccc(CN3CCN(c4ccc(C(N)=O)nc4F)CC3)c(F)c2[nH]c1=O
Aliases
BDBM726517 (preferred) US20250082630, Example 22 (source_name) BDBM726517 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM726517 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM726517 Open - 10.7270/Q27M0DG7
PubChem CID162524487 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1nc2ccc(CN3CCN(c4ccc(C(N)=O)nc4F)CC3)c(F)c2[nH]c1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036193/BDB036193.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036193/BDB036193.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036193/BDB036193.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036193/BDB036193.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036193/BDB036193.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM726517 IC50 6 nM Very high DOI: 10.7270/Q27M0DG7 1