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BDBM730424

E3L036405
Internal ID: BDB036405
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB036405/BDB036405.sdf
Basic Properties
Compound ID
E3L036405
Internal ID
BDB036405
Molecular formula
C21H17ClFN3O4
Molecular weight
429.835000
Exact mass
429.089162
XLogP
2.1701
TPSA
95.5800
HBA / HBD
4 / 2
Rotatable bonds
4
Heavy atoms / rings
30 / 4
Activity summary
IC50 unknown 5500.00000000 nM
1 activity record(s) imported
InChIKey
PUBQBLWDXQMCSX-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3c(CNC(=O)c4ccc(Cl)c(F)c4)cccc3C2=O)C(=O)N1
Aliases
BDBM730424 (preferred) 4-chloro-N-[[2-(2,6-dioxopiperidin-3-yl)-1-oxo-3H-isoindol-4-yl]methyl]-3-fluorobenzamide (source_name) BDBM730424 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM730424 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM730424 Open - 10.7270/Q2794978
PubChem CID176511242 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3c(CNC(=O)c4ccc(Cl)c(F)c4)cccc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036405/BDB036405.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036405/BDB036405.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036405/BDB036405.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036405/BDB036405.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036405/BDB036405.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM730424 IC50 5500 nM Low DOI: 10.7270/Q2794978 1