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BDBM730428

E3L036409
Internal ID: BDB036409
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB036409/BDB036409.sdf
Basic Properties
Compound ID
E3L036409
Internal ID
BDB036409
Molecular formula
C22H19F2N3O4
Molecular weight
427.407000
Exact mass
427.134363
XLogP
2.3152
TPSA
95.5800
HBA / HBD
4 / 2
Rotatable bonds
5
Heavy atoms / rings
31 / 4
Activity summary
IC50 unknown 5500.00000000 nM
1 activity record(s) imported
InChIKey
OCHRYJQRCKUYTN-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3c(CNC(=O)c4cccc(C(F)F)c4)cccc3C2=O)C(=O)N1
Aliases
BDBM730428 (preferred) 3-(difluoromethyl)-N-[[2-(2,6-dioxopiperidin-3-yl)-1-oxo-3H-isoindol-4-yl]methyl]benzamide (source_name) BDBM730428 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM730428 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM730428 Open - 10.7270/Q2794978
PubChem CID176511246 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3c(CNC(=O)c4cccc(C(F)F)c4)cccc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036409/BDB036409.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036409/BDB036409.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036409/BDB036409.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036409/BDB036409.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036409/BDB036409.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM730428 IC50 5500 nM Low DOI: 10.7270/Q2794978 1