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US20250122183, Example 130

E3L036570
Internal ID: BDB036570
Activity data available Local docking-ready structure
Dock with Q6IE81 Dock with Q92794
Structure
/e3_file/ligand_db/generated/BDB036570/BDB036570.sdf
Basic Properties
Compound ID
E3L036570
Internal ID
BDB036570
Molecular formula
C25H23N5O4S
Molecular weight
489.557000
Exact mass
489.147075
XLogP
5.3333
TPSA
122.1400
HBA / HBD
7 / 3
Rotatable bonds
8
Heavy atoms / rings
35 / 5
Activity summary
Ki unknown 13.00000000 nM
3 activity record(s) imported
InChIKey
RKVNWFSAPJYAKV-UHFFFAOYSA-N
SMILES
CCc1cc(Nc2cc3onc(NS(=O)(=O)c4ccc(-c5ccccc5)cc4)c3cc2OC)n[nH]1
Aliases
BDBM730917 (preferred) US20250122183, Example 130 (source_name) BDBM730917 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q6IE81 JADE1;KIAA1807;PHF17
Protein Jade-1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM730917 medium
; target=Histone acetyltransferase KAT6A
Q92794 KAT6A;MOZ;MYST3;RUNXBP2;ZNF220
Histone acetyltransferase KAT6A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM730917 medium
; target=Histone acetyltransferase KAT6A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM730917 Open - 10.7270/Q2V129C4
PubChem CID176511445 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCc1cc(Nc2cc3onc(NS(=O)(=O)c4ccc(-c5ccccc5)cc4)c3cc2OC)n[nH]1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036570/BDB036570.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036570/BDB036570.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036570/BDB036570.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036570/BDB036570.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036570/BDB036570.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone acetyltransferase KAT6A
Q6IE81
E3 ligase component 		BindingDB:BDBM730917 Ki 85 nM High DOI: 10.7270/Q2V129C4 1
Histone acetyltransferase KAT6A
Q92794
E3 ligase component 		BindingDB:BDBM730917 Ki 85 nM High DOI: 10.7270/Q2V129C4 1
Histone acetyltransferase KAT6A
Q92794
E3 ligase component 		BindingDB:BDBM730917 Ki 13 nM High DOI: 10.7270/Q2V129C4 1