< Back to small molecule database

US12269819, Example 27

E3L036744
Internal ID: BDB036744
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB036744/BDB036744.sdf
Basic Properties
Compound ID
E3L036744
Internal ID
BDB036744
Molecular formula
C25H27ClF3N5O5
Molecular weight
569.968000
Exact mass
569.165281
XLogP
2.4215
TPSA
113.1800
HBA / HBD
8 / 2
Rotatable bonds
7
Heavy atoms / rings
39 / 4
Activity summary
IC50 unknown 151.00000000 nM
1 activity record(s) imported
InChIKey
PXYYMZVFHNWHKO-HYPCABPSSA-N
SMILES
CO[C@@H]1[C@@H](n2cc(-c3cc(F)c(F)c(F)c3)nn2)[C@@H](O)[C@@H](CO)O[C@H]1C(=O)N(C)c1cc(Cl)ccc1N(C)C
Aliases
BDBM731615 (preferred) US12269819, Example 27 (source_name) BDBM731615 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM731615 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM731615 Open - 10.7270/Q2930ZRW
PubChem CID164767578 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CO[C@@H]1[C@@H](n2cc(-c3cc(F)c(F)c(F)c3)nn2)[C@@H](O)[C@@H](CO)O[C@H]1C(=O)N(C)c1cc(Cl)ccc1N(C)C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036744/BDB036744.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036744/BDB036744.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036744/BDB036744.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036744/BDB036744.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036744/BDB036744.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM731615 IC50 151 nM Moderate DOI: 10.7270/Q2930ZRW 1