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US12269819, Example 28

E3L036745
Internal ID: BDB036745
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB036745/BDB036745.sdf
Basic Properties
Compound ID
E3L036745
Internal ID
BDB036745
Molecular formula
C29H26ClF3N4O6
Molecular weight
618.996000
Exact mass
618.149297
XLogP
4.1478
TPSA
119.1700
HBA / HBD
8 / 2
Rotatable bonds
8
Heavy atoms / rings
43 / 5
Activity summary
IC50 unknown 425.00000000 nM
1 activity record(s) imported
InChIKey
PRKSLTYBISRSTG-FWZZJMFBSA-N
SMILES
CO[C@@H]1[C@@H](n2cc(-c3cc(F)c(F)c(F)c3)nn2)[C@@H](O)[C@@H](CO)O[C@H]1C(=O)N(C)c1cc(Cl)ccc1Oc1ccccc1
Aliases
BDBM731616 (preferred) US12269819, Example 28 (source_name) BDBM731616 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM731616 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM731616 Open - 10.7270/Q2930ZRW
PubChem CID164767559 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CO[C@@H]1[C@@H](n2cc(-c3cc(F)c(F)c(F)c3)nn2)[C@@H](O)[C@@H](CO)O[C@H]1C(=O)N(C)c1cc(Cl)ccc1Oc1ccccc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036745/BDB036745.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036745/BDB036745.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036745/BDB036745.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036745/BDB036745.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036745/BDB036745.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM731616 IC50 425 nM Moderate DOI: 10.7270/Q2930ZRW 1