< Back to small molecule database

US12269819, Example B4

E3L036762
Internal ID: BDB036762
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB036762/BDB036762.sdf
Basic Properties
Compound ID
E3L036762
Internal ID
BDB036762
Molecular formula
C24H28FN5O6
Molecular weight
501.515000
Exact mass
501.202362
XLogP
0.3829
TPSA
153.2000
HBA / HBD
9 / 5
Rotatable bonds
8
Heavy atoms / rings
36 / 4
Activity summary
IC50 unknown 160.00000000 nM
1 activity record(s) imported
InChIKey
SYQGGRPOLXDSCC-BMXMUORJSA-N
SMILES
CN(CCNc1ccc(O)cc1)C(=O)[C@@H]1O[C@H](CO)[C@H](O)[C@H](n2cc(-c3cccc(F)c3)nn2)[C@H]1O
Aliases
BDBM731636 (preferred) US12269819, Example B4 (source_name) BDBM731636 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM731636 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM731636 Open - 10.7270/Q2930ZRW
PubChem CID155201810 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(CCNc1ccc(O)cc1)C(=O)[C@@H]1O[C@H](CO)[C@H](O)[C@H](n2cc(-c3cccc(F)c3)nn2)[C@H]1O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036762/BDB036762.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036762/BDB036762.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036762/BDB036762.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036762/BDB036762.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036762/BDB036762.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM731636 IC50 160 nM Moderate DOI: 10.7270/Q2930ZRW 1