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BDBM733720

E3L036788
Internal ID: BDB036788
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB036788/BDB036788.sdf
Basic Properties
Compound ID
E3L036788
Internal ID
BDB036788
Molecular formula
C10H12N4O3
Molecular weight
236.231000
Exact mass
236.090940
XLogP
-1.0449
TPSA
93.0900
HBA / HBD
4 / 2
Rotatable bonds
2
Heavy atoms / rings
17 / 2
Activity summary
Kd unknown 75000.00000000 nM
2 activity record(s) imported
InChIKey
ICAYVWJHRCMDIP-UHFFFAOYSA-N
SMILES
Cn1cc(C(=O)NC2CCC(=O)NC2=O)cn1
Aliases
BDBM733720 (preferred) N-(2,6-dioxopiperidin-3-yl)-1-methyl-1H-pyrazole-4-carboxamide (source_name) BDBM733720 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733720 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733720 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM733720 Open - 10.7270/Q2FN1BRK
PubChem CID65955912 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1cc(C(=O)NC2CCC(=O)NC2=O)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036788/BDB036788.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036788/BDB036788.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036788/BDB036788.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036788/BDB036788.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036788/BDB036788.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM733720 Kd 75000 nM Low DOI: 10.7270/Q2FN1BRK 2 source records