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N-(2,6-dioxo-3-piperidinyl)-2,6-dimethylBenzamide

E3L036799
Internal ID: BDB036799
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB036799/BDB036799.sdf
Basic Properties
Compound ID
E3L036799
Internal ID
BDB036799
Molecular formula
C14H16N2O3
Molecular weight
260.293000
Exact mass
260.116092
XLogP
0.8384
TPSA
75.2700
HBA / HBD
3 / 2
Rotatable bonds
2
Heavy atoms / rings
19 / 2
Activity summary
Kd > 100000.00000000 nM
2 activity record(s) imported
InChIKey
PKILDKCVEWXTBC-UHFFFAOYSA-N
SMILES
Cc1cccc(C)c1C(=O)NC1CCC(=O)NC1=O
Aliases
BDBM733731 (preferred) N-(2,6-dioxo-3-piperidinyl)-2,6-dimethylBenzamide (source_name) BDBM733731 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733731 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733731 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM733731 Open - 10.7270/Q2FN1BRK
PubChem CID103822670 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cccc(C)c1C(=O)NC1CCC(=O)NC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036799/BDB036799.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036799/BDB036799.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036799/BDB036799.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036799/BDB036799.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036799/BDB036799.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM733731 Kd >100000 nM Low DOI: 10.7270/Q2FN1BRK 2 source records