< Back to small molecule database

BDBM733781

E3L036849
Internal ID: BDB036849
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB036849/BDB036849.sdf
Basic Properties
Compound ID
E3L036849
Internal ID
BDB036849
Molecular formula
C11H14N4O3
Molecular weight
250.258000
Exact mass
250.106590
XLogP
-0.7027
TPSA
84.3000
HBA / HBD
4 / 1
Rotatable bonds
2
Heavy atoms / rings
18 / 2
Activity summary
Kd unknown 75000.00000000 nM
2 activity record(s) imported
InChIKey
PJYWESOUWRJEQS-UHFFFAOYSA-N
SMILES
CN(C(=O)c1cnn(C)c1)C1CCC(=O)NC1=O
Aliases
BDBM733781 (preferred) N-(2,6-dioxopiperidin-3-yl)-N,1-dimethyl-1H-pyrazole-4-carboxamide (source_name) BDBM733781 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733781 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733781 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM733781 Open - 10.7270/Q2FN1BRK
PubChem CID138467248 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C(=O)c1cnn(C)c1)C1CCC(=O)NC1=O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036849/BDB036849.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036849/BDB036849.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036849/BDB036849.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036849/BDB036849.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036849/BDB036849.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM733781 Kd 75000 nM Low DOI: 10.7270/Q2FN1BRK 2 source records