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BDBM733852

E3L036919
Internal ID: BDB036919
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB036919/BDB036919.sdf
Basic Properties
Compound ID
E3L036919
Internal ID
BDB036919
Molecular formula
C10H11N3O3
Molecular weight
221.216000
Exact mass
221.080041
XLogP
-0.4706
TPSA
81.0600
HBA / HBD
4 / 1
Rotatable bonds
1
Heavy atoms / rings
16 / 2
Activity summary
Kd unknown 30000.00000000 nM
2 activity record(s) imported
InChIKey
DIFWSWHPHBZMAR-UHFFFAOYSA-N
SMILES
Cc1ccc(=O)n(C2CCC(=O)NC2=O)n1
Aliases
BDBM733852 (preferred) 3-(3-methyl-6-oxo-1(6H)-pyridazinyl)-2,6-Piperidinedione (source_name) BDBM733852 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733852 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733852 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM733852 Open - 10.7270/Q2FN1BRK
PubChem CID132118036 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(=O)n(C2CCC(=O)NC2=O)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036919/BDB036919.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036919/BDB036919.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036919/BDB036919.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036919/BDB036919.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036919/BDB036919.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM733852 Kd 30000 nM Low DOI: 10.7270/Q2FN1BRK 2 source records