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BDBM733879

E3L036945
Internal ID: BDB036945
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB036945/BDB036945.sdf
Basic Properties
Compound ID
E3L036945
Internal ID
BDB036945
Molecular formula
C17H19N3O5
Molecular weight
345.355000
Exact mass
345.132471
XLogP
0.2726
TPSA
96.0200
HBA / HBD
5 / 1
Rotatable bonds
3
Heavy atoms / rings
25 / 3
Activity summary
Kd unknown 30000.00000000 nM
2 activity record(s) imported
InChIKey
WNNKPLFJIHAKOP-UHFFFAOYSA-N
SMILES
O=C1CCC(N2CCN(C(=O)OCc3ccccc3)CC2=O)C(=O)N1
Aliases
BDBM733879 (preferred) Benzyl 4-(2,6-dioxopiperidin-3-yl)-3-oxopiperazine-1-carboxylate (source_name) BDBM733879 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733879 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733879 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM733879 Open - 10.7270/Q2FN1BRK
PubChem CID138466942 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2CCN(C(=O)OCc3ccccc3)CC2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB036945/BDB036945.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB036945/BDB036945.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB036945/BDB036945.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB036945/BDB036945.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB036945/BDB036945.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM733879 Kd 30000 nM Low DOI: 10.7270/Q2FN1BRK 2 source records