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BDBM733993

E3L037051
Internal ID: BDB037051
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB037051/BDB037051.sdf
Basic Properties
Compound ID
E3L037051
Internal ID
BDB037051
Molecular formula
C12H10ClN3O3
Molecular weight
279.683000
Exact mass
279.041069
XLogP
0.4960
TPSA
79.3700
HBA / HBD
4 / 1
Rotatable bonds
1
Heavy atoms / rings
19 / 3
Activity summary
Kd < 10000.00000000 nM
2 activity record(s) imported
InChIKey
HEUQLFLPHHXPNU-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3ccc(Cl)nc3C2=O)C(=O)N1
Aliases
BDBM733993 (preferred) 3-(2-Chloro-7-oxo-5,7-dihydro-6H-pyrrolo[3,4-b]pyridin-6-yl)piperidine-2,6-dione (source_name) BDBM733993 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733993 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM733993 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM733993 Open - 10.7270/Q2FN1BRK
PubChem CID132117079 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3ccc(Cl)nc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB037051/BDB037051.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB037051/BDB037051.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB037051/BDB037051.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB037051/BDB037051.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB037051/BDB037051.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM733993 Kd <10000 nM Uncertain DOI: 10.7270/Q2FN1BRK 2 source records