< Back to small molecule database

BDBM741921

E3L037389
Internal ID: BDB037389
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB037389/BDB037389.sdf
Basic Properties
Compound ID
E3L037389
Internal ID
BDB037389
Molecular formula
C36H31F4N5O5
Molecular weight
689.666000
Exact mass
689.226132
XLogP
5.2068
TPSA
122.6300
HBA / HBD
6 / 2
Rotatable bonds
9
Heavy atoms / rings
50 / 6
Activity summary
IC50 < 200.00000000 nM
2 activity record(s) imported
InChIKey
HPGVIFVCSUEFBH-DGPALRBDSA-N
SMILES
CCN1C(=O)[C@@H](NC(=O)c2cccc(C(F)(F)F)c2)[C@H](c2ccc(F)cc2)c2c(CNC(=O)C3=C(C(=O)OC)CC3)nn(-c3ccccc3)c21
Aliases
BDBM741921 (preferred) BDBM741921 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM741921 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM741921 Open - 10.7270/Q2Z60TNT
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCN1C(=O)[C@@H](NC(=O)c2cccc(C(F)(F)F)c2)[C@H](c2ccc(F)cc2)c2c(CNC(=O)C3=C(C(=O)OC)CC3)nn(-c3ccccc3)c21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB037389/BDB037389.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB037389/BDB037389.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB037389/BDB037389.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB037389/BDB037389.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB037389/BDB037389.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM741921 IC50 600 nM Moderate DOI: 10.7270/Q2Z60TNT 1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM741921 IC50 <200 nM Uncertain DOI: 10.7270/Q2Z60TNT 1