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BDBM743423

E3L037903
Internal ID: BDB037903
Activity data available Local docking-ready structure
Dock with O96028
Structure
/e3_file/ligand_db/generated/BDB037903/BDB037903.sdf
Basic Properties
Compound ID
E3L037903
Internal ID
BDB037903
Molecular formula
C25H28F4N8O2
Molecular weight
548.545000
Exact mass
548.227135
XLogP
2.3561
TPSA
138.6800
HBA / HBD
10 / 4
Rotatable bonds
7
Heavy atoms / rings
39 / 5
Activity summary
IC50 > 1000.00000000 nM
1 activity record(s) imported
InChIKey
YYYDXLMJUAWXJA-PXDATVDWSA-N
SMILES
COc1cc(F)c(-c2cc(CN3NCc4cnc(N)nc43)c(N3CCC[C@](N)([C@H](O)C(F)F)C3)cn2)cc1F
Aliases
BDBM743423 (preferred) BDBM743423 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O96028 NSD2;KIAA1090;MMSET;TRX5;WHSC1
Histone-lysine N-methyltransferase NSD2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM743423 medium
; target=Histone-lysine N-methyltransferase NSD2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM743423 Open - 10.7270/Q25Q51PP
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cc(F)c(-c2cc(CN3NCc4cnc(N)nc43)c(N3CCC[C@](N)([C@H](O)C(F)F)C3)cn2)cc1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB037903/BDB037903.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB037903/BDB037903.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB037903/BDB037903.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB037903/BDB037903.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB037903/BDB037903.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase NSD2
O96028
E3 ligase component 		BindingDB:BDBM743423 IC50 >1000 nM Moderate DOI: 10.7270/Q25Q51PP 1