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BDBM743445

E3L037919
Internal ID: BDB037919
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB037919/BDB037919.sdf
Basic Properties
Compound ID
E3L037919
Internal ID
BDB037919
Molecular formula
C15H12N2O3S
Molecular weight
300.339000
Exact mass
300.056863
XLogP
1.3900
TPSA
66.4800
HBA / HBD
4 / 1
Rotatable bonds
1
Heavy atoms / rings
21 / 4
Activity summary
IC50 unknown 5500.00000000 nM
2 activity record(s) imported
InChIKey
ZTCOWAFGFBVCNU-UHFFFAOYSA-N
SMILES
O=C1CC2(CN(C(=O)c3cc4ccccc4s3)C2)C(=O)N1
Aliases
BDBM743445 (preferred) 2-(1-Benzothiophene-2-carbonyl)-2,6-diazaspiro[3.4]octane-5,7-dione (source_name) BDBM743445 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM743445 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM743445 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM743445 Open - 10.7270/Q2X63SHF
PubChem CID176734189 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CC2(CN(C(=O)c3cc4ccccc4s3)C2)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB037919/BDB037919.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB037919/BDB037919.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB037919/BDB037919.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB037919/BDB037919.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB037919/BDB037919.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM743445 IC50 5500 nM Low DOI: 10.7270/Q2X63SHF 2 source records