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BDBM755851

E3L039334
Internal ID: BDB039334
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB039334/BDB039334.sdf
Basic Properties
Compound ID
E3L039334
Internal ID
BDB039334
Molecular formula
C30H29N5O3
Molecular weight
507.594000
Exact mass
507.227040
XLogP
3.9553
TPSA
87.0200
HBA / HBD
5 / 1
Rotatable bonds
6
Heavy atoms / rings
38 / 6
Activity summary
IC50 > 5000.00000000 nM
2 activity record(s) imported
InChIKey
QTXDKOMGTODFNN-ICCFGIFFSA-N
SMILES
C[C@H](c1ccccc1)N(C)Cc1cc(-c2ccc3c(c2)CN(C2CCC(=O)NC2=O)C3=O)n2cncc2c1
Aliases
BDBM755851 (preferred) 3-(5-(7-((methyl((R*)-1-phenylethyl)amino)methyl)imidazo [1,5-a]pyridin-5-yl)-1-oxoisoindolin-2-yl)piperidine-2,6-dione (source_name) BDBM755851 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM755851 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM755851 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM755851 Open - 10.7270/Q2WM1K1R
PubChem CID169206226 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C[C@H](c1ccccc1)N(C)Cc1cc(-c2ccc3c(c2)CN(C2CCC(=O)NC2=O)C3=O)n2cncc2c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB039334/BDB039334.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB039334/BDB039334.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB039334/BDB039334.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB039334/BDB039334.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB039334/BDB039334.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM755851 IC50 >5000 nM Low DOI: 10.7270/Q2WM1K1R 2 source records