< Back to small molecule database

BDBM758002

E3L040055
Internal ID: BDB040055
Activity data available Local docking-ready structure
Dock with Q13191
Structure
/e3_file/ligand_db/generated/BDB040055/BDB040055.sdf
Basic Properties
Compound ID
E3L040055
Internal ID
BDB040055
Molecular formula
C28H29F4N5O3
Molecular weight
559.564000
Exact mass
559.220653
XLogP
4.1938
TPSA
72.7200
HBA / HBD
6 / 0
Rotatable bonds
7
Heavy atoms / rings
40 / 6
Activity summary
IC50 unknown 220.00000000 nM
1 activity record(s) imported
InChIKey
ZVFAYAXPESWTLN-HSZRJFAPSA-N
SMILES
COC1(C)CN(Cc2cc3c(c(C(F)(F)F)c2)CN(c2cccc(C4([C@H](F)c5nncn5C)COC4)c2)C3=O)C1
Aliases
BDBM758002 (preferred) (S)-2-(3-(3-(fluoro(4-methyl-4H-1,2,4-triazol-3-yl)methyl)oxetan-3-yl)phenyl)-6-((3-methoxy-3-methylazetidin-1-yl)methyl)-4-(trifluoromethyl)isoindolin-1-one (source_name) BDBM758002 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q13191 CBLB;RNF56;Nbla00127
E3 ubiquitin-protein ligase CBL-B		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM758002 medium
; target=E3 ubiquitin-protein ligase CBL-B
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM758002 Open - 10.7270/Q22N572G
PubChem CID164869021 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COC1(C)CN(Cc2cc3c(c(C(F)(F)F)c2)CN(c2cccc(C4([C@H](F)c5nncn5C)COC4)c2)C3=O)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040055/BDB040055.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040055/BDB040055.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040055/BDB040055.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040055/BDB040055.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040055/BDB040055.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase CBL-B
Q13191
E3 ligase component 		BindingDB:BDBM758002 IC50 220 nM Moderate DOI: 10.7270/Q22N572G 1