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BDBM761034

E3L040379
Internal ID: BDB040379
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB040379/BDB040379.sdf
Basic Properties
Compound ID
E3L040379
Internal ID
BDB040379
Molecular formula
C21H19Cl2N5O3
Molecular weight
460.321000
Exact mass
459.086495
XLogP
2.7693
TPSA
124.8400
HBA / HBD
6 / 2
Rotatable bonds
5
Heavy atoms / rings
31 / 3
Activity summary
EC50 unknown 200.00000000 nM
4 activity record(s) imported
InChIKey
GENJIFLIICHQDN-UHFFFAOYSA-N
SMILES
CC(C)(C(=O)NCc1cc(Cl)c(C2CCC(=O)NC2=O)c(Cl)c1)c1cnc(C#N)nc1
Aliases
BDBM761034 (preferred) 2-(2-cyanopyrimidin-5-yl)-N-[[3,5-dichloro-4-(2,6-dioxopiperidin-3-yl)phenyl]methyl]-2-methylpropanamide (source_name) BDBM761034 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM761034 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM761034 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM761034 Open - 10.7270/Q2V129KT
PubChem CID176846933 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C(=O)NCc1cc(Cl)c(C2CCC(=O)NC2=O)c(Cl)c1)c1cnc(C#N)nc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040379/BDB040379.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040379/BDB040379.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040379/BDB040379.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040379/BDB040379.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040379/BDB040379.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM761034 EC50 550 nM Moderate DOI: 10.7270/Q2V129KT 2 source records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM761034 EC50 200 nM Moderate DOI: 10.7270/Q2V129KT 2 source records