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BDBM761075

E3L040419
Internal ID: BDB040419
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB040419/BDB040419.sdf
Basic Properties
Compound ID
E3L040419
Internal ID
BDB040419
Molecular formula
C23H25Cl2N3O4
Molecular weight
478.376000
Exact mass
477.122212
XLogP
3.1147
TPSA
97.2700
HBA / HBD
4 / 2
Rotatable bonds
5
Heavy atoms / rings
32 / 3
Activity summary
EC50 unknown 190.00000000 nM
4 activity record(s) imported
InChIKey
CYXYUYLKXGRDAC-UHFFFAOYSA-N
SMILES
Cc1cc(C(C)(C)C(=O)NCc2cc(Cl)c(C3CCC(=O)NC3=O)c(Cl)c2)cc(=O)n1C
Aliases
BDBM761075 (preferred) N-[[3,5-dichloro-4-(2,6-dioxopiperidin-3-yl)phenyl]methyl]-2-(1,2-dimethyl-6-oxo-4-pyridinyl)-2-methylpropanamide (source_name) BDBM761075 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM761075 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM761075 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM761075 Open - 10.7270/Q2V129KT
PubChem CID176846866 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(C(C)(C)C(=O)NCc2cc(Cl)c(C3CCC(=O)NC3=O)c(Cl)c2)cc(=O)n1C keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040419/BDB040419.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040419/BDB040419.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040419/BDB040419.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040419/BDB040419.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040419/BDB040419.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM761075 EC50 190 nM Moderate DOI: 10.7270/Q2V129KT 2 source records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM761075 EC50 550 nM Moderate DOI: 10.7270/Q2V129KT 2 source records