< Back to small molecule database

BDBM761090

E3L040434
Internal ID: BDB040434
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB040434/BDB040434.sdf
Basic Properties
Compound ID
E3L040434
Internal ID
BDB040434
Molecular formula
C21H19Cl2F2N3O3
Molecular weight
470.303000
Exact mass
469.077153
XLogP
3.7808
TPSA
88.1600
HBA / HBD
4 / 2
Rotatable bonds
5
Heavy atoms / rings
31 / 3
Activity summary
EC50 unknown 90.00000000 nM
4 activity record(s) imported
InChIKey
DFNLQGLNJDRMFY-UHFFFAOYSA-N
SMILES
CC(C)(C(=O)NCc1cc(Cl)c(C2CCC(=O)NC2=O)c(Cl)c1)c1c(F)cncc1F
Aliases
BDBM761090 (preferred) N-[[3,5-dichloro-4-(2,6-dioxopiperidin-3-yl)phenyl]methyl]-2-(3,5-difluoro-4-pyridinyl)-2-methylpropanamide (source_name) BDBM761090 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM761090 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM761090 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM761090 Open - 10.7270/Q2V129KT
PubChem CID176157415 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C(=O)NCc1cc(Cl)c(C2CCC(=O)NC2=O)c(Cl)c1)c1c(F)cncc1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040434/BDB040434.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040434/BDB040434.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040434/BDB040434.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040434/BDB040434.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040434/BDB040434.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM761090 EC50 <100 nM High DOI: 10.7270/Q2V129KT 2 source records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM761090 EC50 90 nM High DOI: 10.7270/Q2V129KT 2 source records