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BDBM761189

E3L040532
Internal ID: BDB040532
Activity data available Local docking-ready structure
Dock with Q16531 Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB040532/BDB040532.sdf
Basic Properties
Compound ID
E3L040532
Internal ID
BDB040532
Molecular formula
C20H20Cl2N4O3
Molecular weight
435.311000
Exact mass
434.091246
XLogP
2.8976
TPSA
101.0500
HBA / HBD
5 / 2
Rotatable bonds
5
Heavy atoms / rings
29 / 3
Activity summary
EC50 unknown 120.00000000 nM
4 activity record(s) imported
InChIKey
ZBNWNWNETJCIJF-GFCCVEGCSA-N
SMILES
CC(C)(C(=O)NCc1cc(Cl)c([C@H]2CCC(=O)NC2=O)c(Cl)c1)c1ncccn1
Aliases
BDBM761189 (preferred) N-[[3,5-dichloro-4-[(3R)-2,6-dioxopiperidin-3-yl]phenyl]methyl]-2-methyl-2-pyrimidin-2-ylpropanamide (source_name) BDBM761189 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q16531 DDB1;XAP1
DNA damage-binding protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM761189 medium
; target=DNA damage-binding protein 1
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM761189 medium
; target=DNA damage-binding protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM761189 Open - 10.7270/Q2V129KT
PubChem CID176157495 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)(C(=O)NCc1cc(Cl)c([C@H]2CCC(=O)NC2=O)c(Cl)c1)c1ncccn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040532/BDB040532.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040532/BDB040532.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040532/BDB040532.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040532/BDB040532.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040532/BDB040532.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM761189 EC50 120 nM Moderate DOI: 10.7270/Q2V129KT 2 source records
DNA damage-binding protein 1
Q16531
E3 ligase component 		BindingDB:BDBM761189 EC50 550 nM Moderate DOI: 10.7270/Q2V129KT 2 source records