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US20250257055, Example 4

E3L040656
Internal ID: BDB040656
Activity data available Local docking-ready structure
Dock with Q09472
Structure
/e3_file/ligand_db/generated/BDB040656/BDB040656.sdf
Basic Properties
Compound ID
E3L040656
Internal ID
BDB040656
Molecular formula
C34H31F7N6O4
Molecular weight
720.646000
Exact mass
720.229501
XLogP
4.8651
TPSA
100.0100
HBA / HBD
6 / 1
Rotatable bonds
8
Heavy atoms / rings
51 / 8
Activity summary
IC50 unknown 0.50000000 nM
1 activity record(s) imported
InChIKey
BKCHTXXAFMJELI-SYBRLPANSA-N
SMILES
O=C1N[C@]2(C[C@@H](F)c3cc(-c4cnn(C5CN(C6COC6)C5)c4)ccc32)C(=O)N1CC(=O)N(Cc1ccc(F)cc1)C1(C(F)(F)F)CC(F)(F)C1
Aliases
BDBM764567 (preferred) US20250257055, Example 4 (source_name) BDBM764567 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q09472 EP300;P300
Histone acetyltransferase p300		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM764567 medium
; target=Histone acetyltransferase p300
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM764567 Open - 10.7270/Q2542TC5
PubChem CID176861988 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1N[C@]2(C[C@@H](F)c3cc(-c4cnn(C5CN(C6COC6)C5)c4)ccc32)C(=O)N1CC(=O)N(Cc1ccc(F)cc1)C1(C(F)(F)F)CC(F)(F)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040656/BDB040656.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040656/BDB040656.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040656/BDB040656.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040656/BDB040656.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040656/BDB040656.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone acetyltransferase p300
Q09472
E3 ligase component 		BindingDB:BDBM764567 IC50 0.5 nM Very high DOI: 10.7270/Q2542TC5 1