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CDK2 degrader 1

E3L040689
Internal ID: BDB040689
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB040689/BDB040689.sdf
Basic Properties
Compound ID
E3L040689
Internal ID
BDB040689
Molecular formula
C23H27F2N3O4
Molecular weight
447.482000
Exact mass
447.196963
XLogP
2.8360
TPSA
87.7400
HBA / HBD
5 / 2
Rotatable bonds
5
Heavy atoms / rings
32 / 5
Activity summary
Ki < 100.00000000 nM
1 activity record(s) imported
InChIKey
KUTYUVCSHRYCRH-QYCFJQJSSA-N
SMILES
O=C1CCC(c2c(F)cc(N3CC(NC(=O)OC[C@@H]4C[C@H]5CC[C@@H]4C5)C3)cc2F)C(=O)N1
Aliases
BDBM765776 (preferred) CDK2 degrader 1 (source_name) BDBM765776 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM765776 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM765776 Open - 10.7270/Q2DJ5MDK
PubChem CID171540987 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(c2c(F)cc(N3CC(NC(=O)OC[C@@H]4C[C@H]5CC[C@@H]4C5)C3)cc2F)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040689/BDB040689.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040689/BDB040689.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040689/BDB040689.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040689/BDB040689.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040689/BDB040689.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM765776 Ki <100 nM High DOI: 10.7270/Q2DJ5MDK 1