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BDBM765873

E3L040786
Internal ID: BDB040786
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB040786/BDB040786.sdf
Basic Properties
Compound ID
E3L040786
Internal ID
BDB040786
Molecular formula
C24H27F2N5O3
Molecular weight
471.508000
Exact mass
471.208196
XLogP
3.6065
TPSA
100.3600
HBA / HBD
7 / 2
Rotatable bonds
5
Heavy atoms / rings
34 / 6
Activity summary
Ki < 100.00000000 nM
1 activity record(s) imported
InChIKey
ZNZMJPLCLHLESD-UHFFFAOYSA-N
SMILES
CC1(Nc2nnc(C3CC4(CCC4)C3)o2)CN(c2cc(F)c(C3CCC(=O)NC3=O)c(F)c2)C1
Aliases
BDBM765873 (preferred) 3-[2,6-Difluoro-4-[3-methyl-3-[(5-spiro[3.3]heptan-2-yl-1,3,4-oxadiazol-2-yl)amino]azetidin-1-yl]phenyl]piperidine-2,6-dione (source_name) BDBM765873 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM765873 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM765873 Open - 10.7270/Q2DJ5MDK
PubChem CID171540855 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC1(Nc2nnc(C3CC4(CCC4)C3)o2)CN(c2cc(F)c(C3CCC(=O)NC3=O)c(F)c2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040786/BDB040786.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040786/BDB040786.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040786/BDB040786.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040786/BDB040786.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040786/BDB040786.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM765873 Ki <100 nM High DOI: 10.7270/Q2DJ5MDK 1