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BDBM765898

E3L040811
Internal ID: BDB040811
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB040811/BDB040811.sdf
Basic Properties
Compound ID
E3L040811
Internal ID
BDB040811
Molecular formula
C24H26F2N4O5
Molecular weight
488.491000
Exact mass
488.187126
XLogP
1.5548
TPSA
108.0500
HBA / HBD
6 / 2
Rotatable bonds
5
Heavy atoms / rings
35 / 7
Activity summary
Ki < 100.00000000 nM
1 activity record(s) imported
InChIKey
MBMRTDUDHURITE-UHFFFAOYSA-N
SMILES
O=C1CCC(c2c(F)cc(N3CC(NC(=O)OC45CC(C(=O)N6CCC6)(C4)C5)C3)cc2F)C(=O)N1
Aliases
BDBM765898 (preferred) [3-(azetidine-1-carbonyl)-1-bicyclo[1.1.1]pentanyl] N-[1-[4-(2,6-dioxopiperidin-3-yl)-3,5-difluorophenyl]azetidin-3-yl]carbamate (source_name) BDBM765898 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM765898 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM765898 Open - 10.7270/Q2DJ5MDK
PubChem CID171541261 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(c2c(F)cc(N3CC(NC(=O)OC45CC(C(=O)N6CCC6)(C4)C5)C3)cc2F)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040811/BDB040811.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040811/BDB040811.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040811/BDB040811.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040811/BDB040811.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040811/BDB040811.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM765898 Ki <100 nM High DOI: 10.7270/Q2DJ5MDK 1