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US12409171, Name RG-0008870

E3L040890
Internal ID: BDB040890
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB040890/BDB040890.sdf
Basic Properties
Compound ID
E3L040890
Internal ID
BDB040890
Molecular formula
C29H26F2N4O2
Molecular weight
500.549000
Exact mass
500.202383
XLogP
5.0643
TPSA
67.2300
HBA / HBD
3 / 1
Rotatable bonds
5
Heavy atoms / rings
37 / 5
Activity summary
EC50 unknown 187.00000000 nM
1 activity record(s) imported
InChIKey
JMKDRPHVPUXCDQ-UIOOFZCWSA-N
SMILES
CCN1C(=O)[C@@H](NC(=O)c2cccc(C)c2)[C@@H](c2ccc(F)cc2)c2c(C)nn(-c3ccccc3F)c21
Aliases
BDBM768441 (preferred) US12409171, Name RG-0008870 (source_name) BDBM768441 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM768441 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM768441 Open - 10.7270/Q2MW2NXW
PubChem CID164940388 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCN1C(=O)[C@@H](NC(=O)c2cccc(C)c2)[C@@H](c2ccc(F)cc2)c2c(C)nn(-c3ccccc3F)c21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040890/BDB040890.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040890/BDB040890.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040890/BDB040890.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040890/BDB040890.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040890/BDB040890.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM768441 EC50 187 nM Moderate DOI: 10.7270/Q2MW2NXW 1