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US12409171, Name RG-0013838

E3L040930
Internal ID: BDB040930
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB040930/BDB040930.sdf
Basic Properties
Compound ID
E3L040930
Internal ID
BDB040930
Molecular formula
C35H38F4N4O3Si
Molecular weight
666.792000
Exact mass
666.264930
XLogP
7.8490
TPSA
76.4600
HBA / HBD
4 / 1
Rotatable bonds
8
Heavy atoms / rings
47 / 5
Activity summary
EC50 unknown 4130.00000000 nM
1 activity record(s) imported
InChIKey
LBFDAOABWSUBCO-JDXGNMNLSA-N
SMILES
CCN1C(=O)[C@@H](NC(=O)c2cccc(C(F)(F)F)c2)[C@@H](c2ccc(F)cc2)c2c(CO[Si](C)(C)C(C)(C)C)nn(-c3ccccc3)c21
Aliases
BDBM768481 (preferred) US12409171, Name RG-0013838 (source_name) BDBM768481 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM768481 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM768481 Open - 10.7270/Q2MW2NXW
PubChem CID164609088 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCN1C(=O)[C@@H](NC(=O)c2cccc(C(F)(F)F)c2)[C@@H](c2ccc(F)cc2)c2c(CO[Si](C)(C)C(C)(C)C)nn(-c3ccccc3)c21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040930/BDB040930.sdf Generated from canonical SMILES; MOL2/PDBQT repaired by Open Babel fallback
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040930/BDB040930.mol2 Generated from canonical SMILES; repaired after batch conversion failure
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040930/BDB040930.pdbqt Generated from canonical SMILES; repaired after batch conversion failure
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040930/BDB040930.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040930/BDB040930.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM768481 EC50 4130 nM Low DOI: 10.7270/Q2MW2NXW 1