< Back to small molecule database

US12409171, Name RG-0014004

E3L040958
Internal ID: BDB040958
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB040958/BDB040958.sdf
Basic Properties
Compound ID
E3L040958
Internal ID
BDB040958
Molecular formula
C28H25F3N4O2S
Molecular weight
538.595000
Exact mass
538.165032
XLogP
5.8664
TPSA
67.2300
HBA / HBD
4 / 1
Rotatable bonds
5
Heavy atoms / rings
38 / 5
Activity summary
EC50 unknown 1410.00000000 nM
1 activity record(s) imported
InChIKey
YNRFXXBTKHKBTE-ZEQRLZLVSA-N
SMILES
CCN1C(=O)[C@@H](NC(=O)c2cccc(C(F)(F)F)c2)[C@@H](c2ccc(C)s2)c2c(C)nn(-c3ccccc3)c21
Aliases
BDBM768509 (preferred) US12409171, Name RG-0014004 (source_name) BDBM768509 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM768509 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM768509 Open - 10.7270/Q2MW2NXW
PubChem CID155424415 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCN1C(=O)[C@@H](NC(=O)c2cccc(C(F)(F)F)c2)[C@@H](c2ccc(C)s2)c2c(C)nn(-c3ccccc3)c21 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB040958/BDB040958.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB040958/BDB040958.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB040958/BDB040958.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB040958/BDB040958.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB040958/BDB040958.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM768509 EC50 1410 nM Low DOI: 10.7270/Q2MW2NXW 1