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US20250289799, Example 3

E3L041064
Internal ID: BDB041064
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041064/BDB041064.sdf
Basic Properties
Compound ID
E3L041064
Internal ID
BDB041064
Molecular formula
C27H28F3N5O
Molecular weight
495.549000
Exact mass
495.224595
XLogP
6.3313
TPSA
56.0700
HBA / HBD
5 / 0
Rotatable bonds
7
Heavy atoms / rings
36 / 4
Activity summary
IC50 unknown 2.80000000 nM
1 activity record(s) imported
InChIKey
SKDIECILFGQBFG-UHFFFAOYSA-N
SMILES
COc1cnc(-c2ccccc2C(C)C)nc1N(C)Cc1ccc(-c2nc(C(F)(F)F)cn2C)cc1
Aliases
BDBM771862 (preferred) US20250289799, Example 3 (source_name) BDBM771862 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM771862 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM771862 Open - 10.7270/Q2KS6X99
PubChem CID176244191 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cnc(-c2ccccc2C(C)C)nc1N(C)Cc1ccc(-c2nc(C(F)(F)F)cn2C)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041064/BDB041064.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041064/BDB041064.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041064/BDB041064.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041064/BDB041064.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041064/BDB041064.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component 		BindingDB:BDBM771862 IC50 2.8 nM Very high DOI: 10.7270/Q2KS6X99 1