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US20250289799, Example 13

E3L041074
Internal ID: BDB041074
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041074/BDB041074.sdf
Basic Properties
Compound ID
E3L041074
Internal ID
BDB041074
Molecular formula
C27H32F3N5O
Molecular weight
499.581000
Exact mass
499.255895
XLogP
6.1921
TPSA
56.0700
HBA / HBD
5 / 0
Rotatable bonds
5
Heavy atoms / rings
36 / 5
Activity summary
IC50 unknown 60.00000000 nM
1 activity record(s) imported
InChIKey
AYOSOSQIBCXLPZ-UHFFFAOYSA-N
SMILES
CC(C)c1ccccc1-c1ncc2c(n1)N(CC1CCC(c3nc(C(F)(F)F)cn3C)CC1)CCO2
Aliases
BDBM771872 (preferred) US20250289799, Example 13 (source_name) BDBM771872 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM771872 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM771872 Open - 10.7270/Q2KS6X99
PubChem CID176244136 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)c1ccccc1-c1ncc2c(n1)N(CC1CCC(c3nc(C(F)(F)F)cn3C)CC1)CCO2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041074/BDB041074.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041074/BDB041074.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041074/BDB041074.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041074/BDB041074.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041074/BDB041074.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component 		BindingDB:BDBM771872 IC50 60 nM High DOI: 10.7270/Q2KS6X99 1