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US20250289799, Example 72

E3L041111
Internal ID: BDB041111
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041111/BDB041111.sdf
Basic Properties
Compound ID
E3L041111
Internal ID
BDB041111
Molecular formula
C27H35F3N6O
Molecular weight
516.612000
Exact mass
516.282444
XLogP
6.1350
TPSA
68.1000
HBA / HBD
6 / 1
Rotatable bonds
8
Heavy atoms / rings
37 / 4
Activity summary
IC50 unknown 6.10000000 nM
1 activity record(s) imported
InChIKey
GMDOICJFPHZINJ-UHFFFAOYSA-N
SMILES
CC(C)Oc1cnc(-c2ccccc2C(C)C)nc1NCC1CCN(c2nc(C(F)(F)F)cn2C)CC1
Aliases
BDBM771912 (preferred) US20250289799, Example 72 (source_name) BDBM771912 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48
reported_binder bindingdb_reported Yes No low BindingDB:BDBM771912 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM771912 Open - 10.7270/Q2KS6X99
PubChem CID176244281 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)Oc1cnc(-c2ccccc2C(C)C)nc1NCC1CCN(c2nc(C(F)(F)F)cn2C)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041111/BDB041111.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041111/BDB041111.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041111/BDB041111.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041111/BDB041111.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041111/BDB041111.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component
BindingDB:BDBM771912 IC50 6.1 nM Very high DOI: 10.7270/Q2KS6X99 1