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US20250289799, Example 87

E3L041126
Internal ID: BDB041126
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041126/BDB041126.sdf
Basic Properties
Compound ID
E3L041126
Internal ID
BDB041126
Molecular formula
C29H31F3N6O
Molecular weight
536.602000
Exact mass
536.251144
XLogP
6.1350
TPSA
68.1000
HBA / HBD
6 / 1
Rotatable bonds
7
Heavy atoms / rings
39 / 5
Activity summary
IC50 unknown 6.20000000 nM
1 activity record(s) imported
InChIKey
GFRSKJKFRWTEFP-UHFFFAOYSA-N
SMILES
CC(C)c1ccccc1-c1ncc(N2CCOCC2)c(NCc2ccc(-c3nc(C(F)(F)F)cn3C)cc2)n1
Aliases
BDBM771927 (preferred) US20250289799, Example 87 (source_name) BDBM771927 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM771927 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM771927 Open - 10.7270/Q2KS6X99
PubChem CID176244304 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)c1ccccc1-c1ncc(N2CCOCC2)c(NCc2ccc(-c3nc(C(F)(F)F)cn3C)cc2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041126/BDB041126.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041126/BDB041126.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041126/BDB041126.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041126/BDB041126.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041126/BDB041126.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component 		BindingDB:BDBM771927 IC50 6.2 nM Very high DOI: 10.7270/Q2KS6X99 1