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US20250289799, Example 118

E3L041157
Internal ID: BDB041157
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041157/BDB041157.sdf
Basic Properties
Compound ID
E3L041157
Internal ID
BDB041157
Molecular formula
C26H27N5O4
Molecular weight
473.533000
Exact mass
473.206304
XLogP
4.7341
TPSA
104.4200
HBA / HBD
9 / 1
Rotatable bonds
9
Heavy atoms / rings
35 / 6
Activity summary
IC50 unknown 58.00000000 nM
1 activity record(s) imported
InChIKey
IMKYFMPRYPPYIN-UHFFFAOYSA-N
SMILES
COc1ncnc(C2CC2)c1-c1nc(NCc2ccc(OC3CC(OC)C3)cc2)c2occc2n1
Aliases
BDBM771958 (preferred) US20250289799, Example 118 (source_name) BDBM771958 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM771958 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM771958 Open - 10.7270/Q2KS6X99
PubChem CID176244184 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ncnc(C2CC2)c1-c1nc(NCc2ccc(OC3CC(OC)C3)cc2)c2occc2n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041157/BDB041157.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041157/BDB041157.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041157/BDB041157.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041157/BDB041157.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041157/BDB041157.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component 		BindingDB:BDBM771958 IC50 58 nM High DOI: 10.7270/Q2KS6X99 1