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US20250289799, Example 127

E3L041166
Internal ID: BDB041166
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041166/BDB041166.sdf
Basic Properties
Compound ID
E3L041166
Internal ID
BDB041166
Molecular formula
C27H27F4N7O
Molecular weight
541.553000
Exact mass
541.221321
XLogP
6.0583
TPSA
81.8500
HBA / HBD
7 / 0
Rotatable bonds
8
Heavy atoms / rings
39 / 5
Activity summary
IC50 unknown 4.20000000 nM
1 activity record(s) imported
InChIKey
NWZBULYWZXMKKP-UHFFFAOYSA-N
SMILES
COc1ncnc(C2CC2)c1-c1ncc(F)c(N(C)Cc2ccc(-c3nc(C(F)(F)F)cn3C(C)C)cc2)n1
Aliases
BDBM771967 (preferred) US20250289799, Example 127 (source_name) BDBM771967 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM771967 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM771967 Open - 10.7270/Q2KS6X99
PubChem CID176244190 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ncnc(C2CC2)c1-c1ncc(F)c(N(C)Cc2ccc(-c3nc(C(F)(F)F)cn3C(C)C)cc2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041166/BDB041166.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041166/BDB041166.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041166/BDB041166.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041166/BDB041166.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041166/BDB041166.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component 		BindingDB:BDBM771967 IC50 4.2 nM Very high DOI: 10.7270/Q2KS6X99 1