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US20250289799, Example 129

E3L041168
Internal ID: BDB041168
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041168/BDB041168.sdf
Basic Properties
Compound ID
E3L041168
Internal ID
BDB041168
Molecular formula
C27H27F4N7O
Molecular weight
544.571305
Exact mass
544.240152
XLogP
6.0583
TPSA
81.8500
HBA / HBD
7 / 0
Rotatable bonds
8
Heavy atoms / rings
39 / 5
Activity summary
IC50 unknown 9.00000000 nM
1 activity record(s) imported
InChIKey
NWZBULYWZXMKKP-HPRDVNIFSA-N
SMILES
[2H]C([2H])([2H])N(Cc1ccc(-c2nc(C(F)(F)F)cn2C(C)C)cc1)c1nc(-c2c(OC)ncnc2C2CC2)ncc1F
Aliases
BDBM771969 (preferred) US20250289799, Example 129 (source_name) BDBM771969 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48
reported_binder bindingdb_reported Yes No low BindingDB:BDBM771969 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM771969 Open - 10.7270/Q2KS6X99
PubChem CID176244186 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready [2H]C([2H])([2H])N(Cc1ccc(-c2nc(C(F)(F)F)cn2C(C)C)cc1)c1nc(-c2c(OC)ncnc2C2CC2)ncc1F keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041168/BDB041168.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041168/BDB041168.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041168/BDB041168.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041168/BDB041168.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041168/BDB041168.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component
BindingDB:BDBM771969 IC50 9 nM Very high DOI: 10.7270/Q2KS6X99 1