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US20250289799, Example 137

E3L041176
Internal ID: BDB041176
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041176/BDB041176.sdf
Basic Properties
Compound ID
E3L041176
Internal ID
BDB041176
Molecular formula
C27H28F3N7O2
Molecular weight
539.562000
Exact mass
539.225658
XLogP
5.3872
TPSA
110.8700
HBA / HBD
8 / 2
Rotatable bonds
9
Heavy atoms / rings
39 / 5
Activity summary
IC50 unknown 24.00000000 nM
1 activity record(s) imported
InChIKey
DCKKLJKTUKGBKK-UHFFFAOYSA-N
SMILES
COc1ncnc(C2CC2)c1-c1ncc(CO)c(NCc2ccc(-c3nc(C(F)(F)F)cn3C(C)C)cc2)n1
Aliases
BDBM771977 (preferred) US20250289799, Example 137 (source_name) BDBM771977 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM771977 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM771977 Open - 10.7270/Q2KS6X99
PubChem CID170707707 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ncnc(C2CC2)c1-c1ncc(CO)c(NCc2ccc(-c3nc(C(F)(F)F)cn3C(C)C)cc2)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041176/BDB041176.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041176/BDB041176.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041176/BDB041176.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041176/BDB041176.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041176/BDB041176.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component 		BindingDB:BDBM771977 IC50 24 nM High DOI: 10.7270/Q2KS6X99 1